Doug,
Using mass data from the MLS can help. I agree, the higher the price point the harder it is to derive an adjustment.
I disagree somewhat with others on here. GLA is GLA. Floor plan, room count, room size, bath count, etc. is more important. Appraisers put most on the GLA as it is the easiest to adjust and if they step out of the GLA the red flags at the AMC's and UW's start to go crazy. That is why you never see a functional obso adjustment.
Try this:
Take out as many variables as you can and make the search as similar as possible. Just do not do a search for 3 or 4 bath homes.
For example, same Zip Code, subdivision or neighborhood. Similar price points, 1990-2005 year built, GLA 3,000-3,500 SQFT, similar site size, garage count, etc. Then do one search for 4 baths and another search with 5 baths. PLAY with the data and do it multiple times in different areas. Narrow the search also. You will get a range....that is your support. Now use your experience to what the adjustment will be. Experience for an area does matter....not just what stats or numbers are.
As others have said, what is typical for the market area? A $500k price point and is a newer home (1990-present) I could see 3-4 full baths being typical. So if a home had 2.1 baths, I can see a larger adjustment. 5 baths...over-improvement?
What about cost and some sort of discount to support your adjustment, along with support from matched pairs, etc.?
Some have noted that they do not adjust for bedrooms as they are usually accounted for in the GLA. This is true sometimes, but not all of the time. In my PUD, if you have a 1,800 sqft home with 3 bedrooms and a 1,900 sq ft home with 4 bedrooms or 3 bedrooms and a bonus room; the 1,900 sqft home sells for $6,000-$9,000.
Now if you would only have adjusted for GLA, the adjustment would have been +-$3,500. In my PUD, buyers pay more for 4 bedroom or 3 bedroom with a bonus room home. Most use the bonus room or the 4rth bedroom as a home office or a media room. Most buyers need that extra room as most are working at home or need that media room for their big screen tv. Most families are 4, so they need at least 3 bedrooms and a bedroom/bonus room.