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Deficiencies that are MPR issues have to be clearly associated (in comments) with check box 3 per FHA guidelines.
Cosmetic items are not associated with any checkbox.
If the need for an inspection by another expert arises, that has to be associated with check box 4.
You have to clearly categorize the items between those three catagories for several reasons. First, because that is the guideline. Second, because you are obligated to clearly explain how these items affected your opinion of value.
Your opinion of value is not subject to change due to cosmetic items. Those items are assumed to continue to be just as they are and are reflected in your condition rating. You will seek comparables that have similar condition deficiencies and your opinion of value will reflect that.
Items associated with check box 3 are assumed repair-complete in your opinion of value. Your opinion of value is subject to the HC that as of the effective date those items have been repaired. You will seek comparables that do not have those deficiencies. If these repairs are never made, your opinion of value is subject to change.
If inspections by other experts are necessary, your opinion of value as of the effective date is subject to the assumption (EA) that no other deficiencies will be revealed through the inspection. This is an "as is" opinion of value that is subject to change if further deficiencies are discovered. You will seek comprables that do not have any of the potential issues that could arise from those inspetions.
In order for any reader to understand what your opinion of value is based on (credible report) they must be able to clearly understand which items are associated with which box. It is imperative that you clearly categorize them.
Now, the lender will have some leeway as to how he proceeds. He may decide to require a repair on an item that is only cosmetic and that you have categorized as such. That is between him and his borrower and does not affect your appraised opinion of value. Your opinion of value as of the effective date still stands and still assumes that repair was never made.
Also, the lender may decide to waive a check box 3 item. That is also his choice if FHA will accept it. If he does make this choice and orders the compliance report from you, you still have to answer the questions on that form based on the items that were associated with check box 3 in your appraisal. Not based on any waivers that the lender may have granted. If all of the check box 3 items are not complete, you must say so in that compliance report. When the lender decides to waive an MPR item, he is taking that risk upon himself. He is not, and does not have the power to change your reporting obligations as they relate to MPR. Your obligations are spelled out in the guidelines.
The lender may also decide to waive expert inspections. He can do that (with FHA permission) and should never even mention it to you because you have no need to know.
Remember, the compliance report is only for check box 2 or 3 items. It is not used to discuss unrelated items like cosmetic issues or EAs.
Which brings us to a third reason for clear categorizing of the items. It needs to be very clear between you and your client exactly which items are being reported as "complete" on that form. If the associated items were not clear in the report, and you checked "all items are complete" on that form, how would your lender know which items you meant? He might get confused and think you meant something that was never called for and never completed.
The whole thing is very cut and dried (logical) and when followed properly nobody gets misled or takes on unnecessary liability.
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The hard part is figuring out which items belong with which category. Once that has beed determined, the reporting and handling of the items is very cut and dried.