Suncoast, I appraise your area, and the M&S isn't too low for me unless I am over-appraising the property. These days, it is usually too high.
You have to chose the right quality rating. You have to start with the base price and work your way through the bottom of that page, and then turn to the back of the section for materials used, the garage and porches. If the materials aren't there, like you have a house with high end marble flooring, you turn to the segregated cost section and use the marble under the floor cover, making sure you use the right quality. Once you get the entire thing done, you have to use the multiplier in the green section of the book, and then add in the as is value of the site improvements, which can be determined using the yard/unit costs.
Because we are in areas where there is usually some vacant land around, I find I can usually at the very least find enough data to develop a land value using allocation.
Once all the number are added, you'll find that 9 times out of 10 the cost exceeds the Sales Comparison Approach, and you'll have to reconcile the difference, so that the cost approach reflects market value, using depreciation. In almost every market I do by us there is economic depreciation.